Upload Files to DNAnexus

Upload files to the currently selected DNAnexus project and folder. This function provides a convenient wrapper around the `dx upload` command.

Usage

dx_upload(files, target_dir = NULL, overwrite_old_files = TRUE)

Arguments

files

Character vector of file paths to upload. Can be glob patterns or individual file paths.

target_dir

Character string specifying the target directory in DNAnexus. If NULL (default), uses the current working directory.

overwrite_old_files

Logical. If TRUE (default), overwrites existing files with the same name. If FALSE, skips files that already exist.

Value

Character vector containing the upload command output (stdout)

Examples

if (FALSE) { # \dontrun{
# Upload a single file
# dx_upload("local_file.csv")
#
# Upload multiple files to a specific directory
# dx_upload(c("file1.csv", "file2.csv"), target_dir = "/my_folder")
#
# Upload with overwrite disabled
# dx_upload("data.csv", overwrite_old_files = FALSE)
#
# Upload files using glob patterns
# dx_upload("data_*.csv")
} # }